Specialist Accountants for Ecommerce & Shopify Agencies

Ecommerce & Shopify Agencies
Accountants UK

Chartered accountants specialising in ecommerce & shopify agencies. We understand your business model, cash flow patterns, and growth trajectory.

Why Specialist Accounting?

Ecommerce & Shopify Agencies have unique accounting challenges. Unlike generalist accountants, we understand your business model, your cash flow patterns, and your growth trajectory.

Key Challenges

Accounting Challenges for Ecommerce & Shopify Agencies

Unique challenges that most generalist accountants simply don't understand:

Platform Partnership Revenue

Shopify Partner revenue, app referral commissions, and theme royalties need different accounting treatment. Mixing them creates reporting chaos.

Project vs Recurring Revenue Mix

Build projects (one-time) plus retainers (ongoing support) plus partner commissions (variable). Forecasting is impossible without clear separation.

Developer & Specialist Costs

Mix of in-house developers and specialist contractors (Shopify experts, app developers). True project margins are hidden by this complexity.

Our Services

Tailored for Ecommerce & Shopify Agencies

Services designed specifically for your business model:

Partner Revenue Accounting

Properly account for Shopify Partner revenue, app commissions, and theme royalties. Clear separation for tax efficiency and reporting.

Revenue Stream Separation

Track project revenue, retainer revenue, and partner commissions separately. Forecast each stream independently for accurate planning.

Project Profitability Analysis

Allocate developer costs, contractor fees, and overhead to each project. Know true margins per build and per client.

R&D Tax Credits for Development

Custom Shopify app development, theme creation, and technical integrations often qualify. Claim 20-25% back on eligible development costs.

Monthly Bookkeeping

Client invoicing, contractor payments, platform commissions, software subscriptions. Clean records and VAT compliance.

Tax Planning for Tech Agencies

Salary/dividend optimization, EMI share schemes for key developers, and Corporation Tax planning.

Why Ecommerce & Shopify Agencies Choose Alto

Clear partner revenue accounting

Shopify Partner, app commissions, royalties

Forecast each revenue stream

Projects, retainers, commissions

Know true project margins

After all developer costs

Claim R&D tax credits

On custom development work

EMI share schemes

Retain key developers tax-efficiently

UK Coverage

Serving Ecommerce & Shopify Agencies Nationwide

We're remote-first, but have deep expertise in these key locations:

FAQ

Common Questions

How do I account for Shopify Partner revenue?
Partner revenue (20% of client Shopify subscriptions), app referral commissions, and theme royalties are recognized when earned. We track each stream separately for clear reporting and tax planning.
Can ecommerce agencies claim R&D tax credits?
Yes. Custom app development, theme creation, complex integrations, and novel technical solutions qualify. We typically identify 20-40% of development costs as eligible, worth 20-25% tax relief.
What ecommerce tools are tax-deductible?
Shopify Partner fees, development tools, staging environments, testing services, project management, code repositories—all deductible. We ensure proper categorisation.
How do I retain key developers tax-efficiently?
EMI (Enterprise Management Incentive) share schemes let key developers acquire shares at low tax rates. We help structure schemes that retain talent while being tax-efficient for everyone.
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Ready to work with specialists?

Get a free consultation with an accountant who truly understands ecommerce & shopify agencies. No jargon, no surprises.

We onboard a limited number of new clients each quarter to ensure quality.